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Medical

2021

Standard vs. Learning-based Codecs for Real Time Endoscopic Video Transmission

Iuri Frosio, Aldo Marzullo, Martina Golini, Elena De Momi, Michele Catellani, Francesco Calimeri, Giuseppe Fiameni

Improving Long-read Consensus Sequencing Accuracy with Deep Learning

Avantika Lal, Michael Brown, Rahul Mohan, Joyjit Daw, James Drake, Johnny Israeli

Genome-wide Bioinformatic Analyses Predict Key Host and Viral Factors in SARS-CoV-2 Pathogenesis

Mariana G. Ferrarini, Avantika Lal, Rita Rebollo, Andreas Gruber, Andrea Guarracino, Itziar Martinez Gonzalez, Taylor Floyd, Daniel Siqueira de Oliveira, Justin Shanklin, Ethan Beausoleil, Taneli Pusa, Brett E. Pickett, Vanessa Aguiar-Pulido

Deep Learning-based Enhancement of Epigenomics Data with AtacWorks

Avantika Lal, Zachary D Chiang, Nikolai Yakovenko, Fabiana M Duarte, Johnny Israeli, Jason D Buenrostro

2020

LAMP: Large Deep Nets with Automated Model Parallelism for Image Segmentation

Wentao Zhu, Can Zhao, Wenqi Li, Holger Roth, Ziyue Xu, Daguang Xu

Weakly Supervised One-stage Vision and Language Disease Detection using Large Scale Pneumonia and Pneumothorax Studies

Leo Tam, Xiaosong Wang, Evrim Turkbey, Kevin Lu, Yuhong Wen, Daguang Xu

When Radiology Report Generation Meets Knowledge Graph

Yixiao Zhang, Xiaosong Wang, Ziyue Xu, Qihang Yu, Alan Yuille, Daguang Xu

Genome Variant Calling with a Deep Averaging Network

Nikolai Yakovenko, Avantika Lal, Johnny Israeli, Bryan Catanzaro

Neurreg: Neural registration and its application to image segmentation

Wentao Zhu, Andriy Myronenko, Ziyue Xu, Wenqi Li, Holger Roth, Yufang Huang, Fausto Milletari, Daguang Xu

2019

An Alarm System for Segmentation Algorithm Based on Shape Model

Fengze Liu, Yingda Xia, Dong Yang, Alan Yuille, Daguang Xu

4D CNN for semantic segmentation of cardiac volumetric sequences

Andriy Myronenko, Dong Yang, Varun Buch, Daguang Xu, Alvin Ihsani, Sean Doyle, Mark Michalski, Neil Tenenholtz, Holger Roth

Cardiac Segmentation of LGE MRI with Noisy Labels

Holger Roth, Wentao Zhu, Dong Yang, Ziyue Xu, Daguang Xu

Privacy-preserving Federated Brain Tumour Segmentation

Wenqi Li, Fausto Milletari, Daguang Xu, Nicola Rieke, Jonny Hancox, Wentao Zhu, Maximilian Baust, Yan Cheng, Sebastien Ourselin, M. Jorge Cardoso, Andrew Feng

Deep Hierarchical Multi-label Classification of Chest X-ray Images

Haomin Chen, Shun Miao, Daguang Xu, Gregory D. Hager, Adam P. Harrison