Realizing fault-tolerant quantum computing requires mapping logical programs to heterogeneous quantum error correction (QEC) codes and diverse fault-tolerant execution models, scheduling physical resources, and coupling to real-time classical control and feedback. Specialized tools exist for each step but rely on manual composition and translation that discard assumptions and provenance, separating resource estimates from the compiler artifacts they describe, and making it difficult to validate correctness, compare architectures, or attribute costs to specific design choices.